Available CHASMplus models¶
CHASMplus can perform predictions either using a cancer type-specific model or in a “pan-cancer” manner by consider multiple cancer types together. Pan-cancer is a useful default if a matching cancer type is not available from The Cancer Genome Atlas (TCGA). We have made the following results available through OpenCRAVAT:
Annotator name | Data source | Cancer type |
---|---|---|
chasmplus | TCGA | Pan-cancer (multiple cancer types) |
chasmplus_LAML | TCGA | Acute Myeloid Leukemia |
chasmplus_ACC | TCGA | Adrenocortical carcinoma |
chasmplus_BLCA | TCGA | Bladder Urothelial Carcinoma |
chasmplus_LGG | TCGA | Brain Lower Grade Glioma |
chasmplus_BRCA | TCGA | Breast invasive carcinoma |
chasmplus_CESC | TCGA | Cervical squamous cell carcinoma and endocervical adenocarcinoma |
chasmplus_CHOL | TCGA | Cholangiocarcinoma |
chasmplus_COAD | TCGA | Colon adenocarcinoma |
chasmplus_ESCA | TCGA | Esophageal carcinoma |
chasmplus_GBM | TCGA | Glioblastoma multiforme |
chasmplus_HNSC | TCGA | Head and Neck squamous cell carcinoma |
chasmplus_KICH | TCGA | Kidney Chromophobe |
chasmplus_KIRC | TCGA | Kidney renal clear cell carcinoma |
chasmplus_KIRP | TCGA | Kidney renal papillary cell carcinoma |
chasmplus_LIHC | TCGA | Liver hepatocellular carcinoma |
chasmplus_LUAD | TCGA | Lung adenocarcinoma |
chasmplus_LUSC | TCGA | Lung squamous cell carcinoma |
chasmplus_DLBC | TCGA | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma |
chasmplus_MESO | TCGA | Mesothelioma |
chasmplus_OV | TCGA | Ovarian serous cystadenocarcinoma |
chasmplus_PAAD | TCGA | Pancreatic adenocarcinoma |
chasmplus_PCPG | TCGA | Pheochromocytoma and Paraganglioma |
chasmplus_PRAD | TCGA | Prostate adenocarcinoma |
chasmplus_READ | TCGA | Rectum adenocarcinoma |
chasmplus_SARC | TCGA | Sarcoma |
chasmplus_SKCM | TCGA | Skin Cutaneous Melanoma |
chasmplus_STAD | TCGA | Stomach adenocarcinoma |
chasmplus_TGCT | TCGA | Testicular Germ Cell Tumors |
chasmplus_THYM | TCGA | Thymoma |
chasmplus_THCA | TCGA | Thyroid carcinoma |
chasmplus_UCS | TCGA | Uterine Carcinosarcoma |
chasmplus_UCEC | TCGA | Uterine Corpus Endometrial Carcinoma |
chasmplus_UVM | TCGA | Uveal Melanoma |